Baumgartner K,Trevadon R, Bruhn J, Bergemann SE (2010) Contrasting patterns of genetic diversity and population structure of Armillaria mellea sensu stricto in the eastern and western United States. Phytopathology 100: 708-718.
Bonuso E, Zambonelli A, Bergemann SE, Mirco I, Garbelotto M (2010) Multilocus phylogenetic and coalescent analyses identify two cryptic species in the Italian bianchetto truffle, Tuber borchii Vittad. Conservation Genetics 11: 1453-1466.
Baumgartner K, Grubisha LG, Fujiyoshi P, Garbelotto M, Bergemann SE (2009) Microsatellite markers for the diploid basidiomycete fungus Armillaria mellea. Molecular Ecology Resources 9: 943-946.
Baumgartner K, Bergemann SE, Fujiyoshi P, Rolshaushen PE, Gubler WD (2009) Microsatellite markers for the grapevine pathogen, Eutypa lata. Molecular Ecology Resources 9: 222-224.
Bergemann SE, Smith MA, Parrent JL, Gilbert GS, Garbelotto M (2009) Genetic population structure and distribution of a fungal polypore, Datronia caperata (Polyporaceae), in mangrove forests of Central America. Journal of Biogeography 36: 266-279.
Grubisha LG, Bergemann SE, Bruns TD (2007) Host islands within the California Northern Channel Islands create fine-scale genetic structure in two sympatric species of the symbiotic ectomycorrhizal fungus Rhizopogon. Molecular Ecology 16: 1811-1822.
Guglielmo F, Bergemann SE, Gonthier P, Nicolotti G, Garbelotto M (2007) A multiplex PCR-based method for the detection and early identification of wood rotting fungi in standing trees. Journal of Applied Microbiology 103: 1490-1507.
Kennedy PG, Bergemann SE, Hortal S, Bruns TD (2007) Determining the outcome of field-based competition between two Rhizopogon species using real-time PCR. Molecular Ecology 61: 881-890.
Kennedy PG, Hortal S, Bergemann SE, Bruns TD (2007) Competitive interactions among three ecotmycorrhizal fungi and their relation to host plant performance. Journal of Ecology 95: 1138-1345.
Peay K, Bruns TD, Kennedy PG, Bergemann SE, Bruns TD (2007) A strong species–area relationship for eukaryotic soil microbes: island size matters for ectomycorrhizal fungi. Ecology Letters 10: 470-480.
Bergemann SE, Garbelotto M (2006) High diversity of fungi recovered from the roots of mature tanoak (Lithocarpus densiflorus) in northern California. Canadian Journal of Botany 84: 1380-1394.
Bergemann SE, Douhan GW, Garbelotto M, Miller SL (2006) No evidence of population structure across three sub-populations of Russula brevipes in an oak/pine woodland. New Phytologist 170: 177-284.
Bergemann SE, Miller SL, Garbelotto M (2005) Microsatellite loci from Russula brevipes, a common ectomycorrhizal associate of several tree species in North America. Molecular Ecology Notes 5: 472-474.
Bergemann SE, Miller SL (2002) Size, distribution, and persistence of genets in local populations of the late-stage ectomycorrhizal fungus, Russula brevipes. New Phytologist 156: 313-320.
Bergemann SE, Largent DL (2000) The site specific variables that correspond with the distribution of basidiomata of the Pacific golden chanterelle, Cantharellus formosus. Forest Ecology and Management 130: 99-107.